2016


Peer-reviewed Journal Articles

  • Patrick O’Leary, James Ahrens, Sebastien Jourdain, Scott Wittenburg, David H. Rogers, and Mark Petersen. Cinema image-based in situ analysis and visualization of MPAS-Ocean simulations. Parallel Computing, July 2016.
  • Oliver Rubel, Burlen Loring, Jean-Luc Vay, David P. Grote, Remi Lehe, Stepan Bulanov, Henri Vincenti, and E. Wes Bethel. In Situ Visualization and Analysis of Ion Accelerator Simulations Using Warp and VisIt. IEEE Computer Graphics and Applications, 2016.

Peer-reviewed Conference Papers

  • Utkarsh Ayachit, Andrew Bauer, Earl P. N. Duque, Greg Eisenhauer, Nicola Ferrier, Junmin Gu, Kenneth E. Jansen, Burlen Loring, Zarija Lukic, Suresh Menon, Dmitriy Morozov, Patrick O’Leary, Rateesh Ranjan, Michel Rasquin, Christopher P. Stone, Venkat Vishwanath, Gunther H. Weber, Brad Whitlock, Matthew Wolf, K. John Wu, and E. Wes Bethel, Performance Analysis, Design Considerations, and Applications of Extreme-scale In Situ Infrastructures. In Proceedings of SC16, November 2016. In review.
  • Andrew C. Bauer, Hasan Abbasi, James Ahrens, Hank Childs, Berk Geveci, Scott Klasky, Kenneth Moreland, Patrick O’Leary, Venkatram Vishwanath, Brad Whitlock, and E. Wes Bethel. In Situ Methods, Infrastructures, and Applications on High Performance Computing Platforms, a State-of-the-art (STAR) Report. In Computer Graphics Forum, Proceedings of Eurovis 2016, Groningen, Netherlands, June 2016. Wiley-Blackwell. To appear.
  • Michael Kerber, Dmitriy Morozov, and Arnur Nigmetov. Geometry helps to compare persistence diagrams. In Proceedings of Algorithm Engineering and Experiments (ALENEX), 2016.
  • Penporn Koanantakool, Ariful Azad, Aydin Buluc, Dmitriy Morozov, Sang-Yun Oh, Leonid Oliker, and Katherine Yelick. Communication-avoiding parallel sparse-dense matrix-matrix multiplication. In Proceedings of International Parallel and Distributed Processing Symposium (IPDPS), 2016.
  • Dmitriy Morozov and Zarija Lukic. Master of puppets: Cooperative multitasking for in situ processing. In Proceedings of High-Performance Parallel and Distributed Computing (HPDC), 2016.
  • Brad J. Whitlock, James R. Forsythe, and Steve M. Legensky. In Situ Infrastructure Enhancements for Data Extract Generation. In 54th AIAA Aerospace Sciences Meeting, SciTech 2016, pages 1–12, January 2016.
  • Andrew Wissink,Jayanarayanan Sitaraman,Buvaneswari Jayaraman,Beatrice Roget,Vinod K. Lakshminarayan, Mark A. Potsdam, Rohit Jain, Andrew Bauer, and Roger Strawn. Recent Advancements in the Helios Rotorcraft Simulation Code. In 54th AIAA Aerospace Sciences Meeting, SciTech 2016, pages 1–22, January 2016.

Peer-reviewed Workshop Papers

  • Wahid Bhimji, Debbie Bard, Melissa Romanus, David Paul, Andrey Ovsyannikov, Brian Friesen, Matt Bryson, Joaquin Correa, Glenn K. Lockwood, Vakho Tsulaia, Suren Byna, Steve Farrell, Doga Gursoy, Chris Daley, Vince Beckner, Brian Van Straalen, David Trebotich, Craig Tull, Gunther H. Weber, Nicholas J. Wright, Katie Antypas, and Prabhat. Accelerating Science with the NERSC Burst Buffer Early User Program. In CUG2016 Proceedings, 2016. Best paper award.

Peer-reviewed Book Chapters

Coming soon…

Peer Reviewed Abstracts

Coming soon…

2015


Peer-reviewed Journal Articles

None reported

Peer-reviewed Conference Papers

  • Patrick O’Leary, Mark Christon, Sebastien Jourdain, Chris Harris, Markus Berndt, and Andrew Bauer. HPCCloud: A cloud/web-based simulation environment. In 2015 IEEE 7th International Conference on Cloud Computing Technology and Science (CloudCom15), pages 25–33. IEEE, 2015.
  • Preeti Malakar, Venkatram Vishwanath, Todd Munson, Christopher Knight, Mark Hereld, Sven Leyffer, and Michael E. Papka. Optimal scheduling of in situ analysis for large-scale scientific simulations. In Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis, SC15, pages 52:1–52:11, New York, NY, USA, 2015. ACM.
  • Earl P.N Duque, Brad J. Whitlock, Steve M. Legensky, Christopher P. Stone, Reetesh Ranjan, and Suresh Menon. The impact of in situ data processing and analytics upon scaling of cfd solvers and workflows. In Proceedings of the 27th International Conference on Parallel CFD (ParCFD 2015), 2015.
  • Michael Kerber, Dmitriy Morozov, and Arnur Nigmetov. Geometry helps to compare persistence diagrams. In Proceedings of Algorithm Engineering and Experiments (ALENEX), 2016.
  • J. Dayal, K. Schwan, M. Wolf, G. Eisenhauer, J. Lofstead, H. Abbasi, and S. Klasky. Soda: Science-driven orchestration of data analytics. In Proceedings of the IEEE International Conference on eScience (eScience’15), 2015.
  • Ryan Lewis and Dmitriy Morozov. Parallel computation of persistent homology using the blowup complex. In ACM Symposium on Parallelism in Algorithms and Architectures (SPAA), pages 323–331, Portland, OR, June 2015.

Peer-reviewed Workshop Papers

  • Utkarsh Ayachit, Andrew Bauer, Berk Geveci, Patrick O’Leary, Kenneth Moreland, Nathan Fabian, and Jeffrey Mauldin. ParaView Catalyst: Enabling in situ data analysis and visualization. In Proceedings of ISAV 2015: In Situ Infrastructures for Enabling Extreme-scale Analysis and Visualization, Austin, TX, November 2015.

Peer-reviewed Book Chapters

  • Patrick Oesterling, Christian Heine, Gunther H. Weber, Dmitriy Morozov, and Gerik Scheuer- mann. Computing and visualizing time-varying merge trees for high-dimensional data. In Topological Methods in Data Analysis and Visualization IV (Proc. TopoInVis 2015). 2015. Accepted with minor revisions. Best paper award.

Peer Reviewed Abstracts

  • E. Wes Bethel (organizer), Patrick O’Leary, John Clyne, Venkat Vishwanath, and Jacqueline Chen. In Situ Methods: Hype or Necessity? In IEEE International Conference for High Per- formance Computing, Networking, Storage and Analysis (SC15), Austin, TX, USA, November 2015. (Organizer: Bethel).

2014


Peer-reviewed Journal Articles

None reported

Peer-reviewed Conference Papers

  • James Ahrens, Sebastien Jourdain, Patrick O’Leary, John Patchett, David H. Rogers, and Mark Petersen. An image-based approach to extreme scale in situ visualization and analysis. In Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis (SC ’14), pages 424–434, Piscataway, NJ, USA, 2014. IEEE Press.
  • James Ahrens, Sebastien Jourdain, Patrick O’Leary, John Patchett, David H Rogers, Mark Petersen, Andrew Bauer, Patricia Fasel, Franseca Samsel, and Ben Boeckel. In situ MPAS-Ocean image-based visualization. In Visualization & Data Analytics Showcase, International Conference for High Performance Computing, Net- working, Storage and Analysis (SC ’14), 2014.

Peer-reviewed Workshop Papers

None reported

Peer-reviewed Book Chapters

None reported

Peer Reviewed Abstracts

None reported